Project: Traditional Pokkali Seed Genome Database


On-going project to generate Genomic DNA Sequence database for all existing traditional Pokkali seeds (past and present) exclusively from coastal clay Pokkali farm lands of Ernakulam, Alappuzha and Thrissur districts that represent authentic GI Tagged Organic Pokkali cultivation to enable rapid classification, authentication, preservation and revival. Authentic heirloom Pokkali rice is GI-tagged to be only those harvested continuously over millenia from farm lands of central coastal Kerala. Studies with misrepresented specimens such as Bengal Pokkali or Vyttila-x genetically modified varieties grown in other inland regions do not represent authentic Pokkali and remain invalid.

Genome Sequencing

Ezhikkara Pokkali Profile

Ezhikkara Pokkali Telomere


Ezhikkara Pokkali Genome

Download Ezhikkara-Pokkali-Genome.fastq.gz
Download Ezhikkara-Pokkali-Genome.fasta.gz
Download Ezhikkara-Pokkali-Biomarkers.pdf

Ernakulam Samples

2010 Ezhikkara Pokkali
2024 Ezhikkara Chettivirippu
2024 Karumalloor Chettivirippu
2024 Chellanam Chettivirippu
2024 Chellanam Cheruvirippu
20xx Choottu Pokkali
20xx Ponkuruka

Alappuzha Samples

2024 Olavaipe Chettivirippu
2024 Olavaipe Cheruvirippu
2024 Cherthala Chettivirippu
2024 Cherthala Cheruvirippu
20xx Athikiramundakan
20xx Vellamundakan
20xx Njavara

Thrissur Samples

20xx Thrissur District Varieties
20xx Vellakkoli (pokkali?)
Non-Pokkali Samples
2024 Kaipad from Kannur
Preliminary draft